Changelog • hyperion.tables

hyperion.tables 0.3.0

apply_summary_spec() no longer has a default for spec. Pass SummarySpec() explicitly.

set_spec_tag_filter() gains an exclude parameter to remove models by tag (e.g., set_spec_tag_filter(exclude = "failed")).
Section rules for summary tables. section_rules() / set_spec_sections() now work with SummarySpec, enabling model grouping in summary tables (e.g., "base" %in% tags ~ "Base Models"). Rules are evaluated row-by-row to support list columns like tags.
Section filtering. set_spec_section_filter() excludes entire sections from both parameter and summary tables. Pass NA to also remove rows that didn’t match any section rule.
set_spec_sections() promoted from TableSpec-only to a common modifier that works on both TableSpec and SummarySpec.
get_spec_section_filter() getter for reading the current section filter.

Fixed crash when multiple section rules mapped to the same label (e.g., two rules both producing "Base Models"). Duplicate factor levels are now deduplicated before ordering.
Multi-match section warning now only fires when a row matches rules with genuinely different labels. Same-label multi-match (intentional overlap) no longer warns.
katex moved back to Suggests (from Imports) with a one-time warning when missing, instead of aborting render_to_gt().

apply_summary_spec() now aborts when no models remain after filtering or the tree is empty, instead of silently returning an empty data frame.
compare_with() now aborts when reference_model does not match any model in the comparison, instead of silently falling through to the default.

compare_with(reference_model = ...): use an existing model run_name or label already present in the comparison chain; unmatched values now error.
apply_summary_spec(): if your filters or input tree can produce zero models, handle that case before calling apply_summary_spec() instead of relying on an empty-table return.
compare_with(labels = ...) in chained comparisons (params1 is already a comparison):
- length 1: append the new label to existing labels.
- length 2: rename the previous/latest existing label to labels[1], then append labels[2] for the newly added model.

compare_with() warns when models share no parameters after joining.
Summary table dOFV calculation warns when a model has multiple based_on parents, indicating which parent is used.
Footnote about number of observations not matching reference model is now an rlang::inform instead of footnote.
LRT suppression now emits an informational message with the reason (e.g., “models not in direct lineage”, “degrees of freedom is zero”).
make_comparison_table() validates the comparison is renderable before building, aborting early with actionable hints if no rows or model columns remain.
SummarySpec now validates n_decimals_ofv at construction time.

Fixed incorrect LRT p-values in model comparison output.
Fixed p-value rendering when df column is dropped.
Fixed format_time_columns crash when all time values are NA in auto mode.
Fixed missing parameter-count values in rows used for dOFV/p-value calculations.
Fixed summary table generation so one unreadable or unsummarizable model no longer aborts the entire table.
Fixed cases where model files with extensions were not resolved correctly.
Fixed source_dir resolution to use config-relative path resolution, so relative paths in pharos.toml are handled correctly.