A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.
volcano_example.dfA data.frame object with 1218 rows and 5 variables
Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.
Other Transcriptomics data:
quadrant_example.df
colnames(volcano_example.df)
#> [1] "tag" "gene" "outcome" "logFC" "PValue" "genotype"
head(volcano_example.df)
#> tag gene outcome logFC PValue genotype
#> 1 AT1G01040 ASU1 0 -0.15284466 0.35266997 Ler
#> 2 AT1G01290 ASG4 0 -0.30057068 0.05471732 Ler
#> 3 AT1G01560 ATSBT1.1 0 -0.57783350 0.06681310 Ler
#> 4 AT1G01790 AtSAM1 0 -0.04729662 0.74054263 Ler
#> 5 AT1G02130 AtTRM82 0 -0.14279891 0.29597519 Ler
#> 6 AT1G02560 PRP39 0 0.23320752 0.07487043 Ler