A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.
quadrant_example.dfA data.frame object with 6088 rows and 6 variables
Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.
Other Transcriptomics data:
volcano_example.df
colnames(quadrant_example.df)
#> [1] "tag" "gene" "outcome.x" "outcome.y" "logFC.x" "logFC.y"
#> [7] "genotype"
head(quadrant_example.df)
#> tag gene outcome.x outcome.y logFC.x logFC.y genotype
#> 1 AT5G11060 TIC56 0 0 -0.17685517 -0.32956762 Ler
#> 2 AT3G01280 ATWRKY48 0 0 -0.06471884 0.07771315 Ler
#> 3 AT5G06320 ANY1 0 0 -0.35200684 -0.04331339 Ler
#> 4 AT1G05850 AP1M1 0 0 -0.40284744 -0.04505435 Ler
#> 5 AT2G22300 HSA32 0 0 -0.34482142 -0.11185095 Ler
#> 6 AT2G16070 UBQ11 0 0 -0.22328946 -0.23210780 Ler