Make Supplemental Qualifier

Usage

make_supp_qual(dataset, metacore, dataset_name = deprecated())

Arguments

dataset: dataset the supp will be pulled from
metacore: A subsetted metacore object to get the supp information from. If not already subsetted then a dataset_name will need to be provided
dataset_name: Optional string to specify the dataset that is being built. This is only needed if the metacore object provided hasn't already been subsetted.
Note: Deprecated in version 0.2.0. The dataset_name argument will be removed in a future release. Please use metacore::select_dataset to subset the metacore object to obtain metadata for a single dataset.

Value

a CDISC formatted SUPP dataset

Examples


library(metacore)
library(safetyData)
library(tibble)
load(metacore_example("pilot_SDTM.rda"))
spec <- metacore %>% select_dataset("AE")
#> Warning: `key_seq` from the `ds_vars` table only contains missing values.
#> Warning: `core` from the `ds_vars` table only contains missing values.
#> Warning: `supp_flag` from the `ds_vars` table only contains missing values.
#> Warning: `format` from the `var_spec` table only contains missing values.
#> Warning: `sig_dig` from the `value_spec` table only contains missing values.
#> Warning: `where` from the `value_spec` table only contains missing values.
#> ✔ AE dataset successfully selected
ae <- combine_supp(sdtm_ae, sdtm_suppae)
make_supp_qual(ae, spec) %>% as_tibble()
#> Error: No supplemental variables specified in metacore object. Please check your specifications