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Half Violin plot

Source: R/geom_half_violin.R, R/stat-half-ydensity.R
geom_half_violin.Rd

A violin plot is a compact display of a continuous distribution. It is a blend of [geom_boxplot()] and [geom_density()]: a violin plot is a mirrored density plot displayed in the same way as a boxplot.

Usage

geom_half_violin(
  mapping = NULL,
  data = NULL,
  stat = "half_ydensity",
  position = "dodge",
  ...,
  side = "l",
  nudge = 0,
  draw_quantiles = NULL,
  trim = TRUE,
  scale = "area",
  na.rm = FALSE,
  show.legend = NA,
  inherit.aes = TRUE
)

stat_half_ydensity(
  mapping = NULL,
  data = NULL,
  geom = "half_violin",
  position = "dodge",
  ...,
  bw = "nrd0",
  adjust = 1,
  kernel = "gaussian",
  trim = TRUE,
  scale = "area",
  na.rm = FALSE,
  show.legend = NA,
  inherit.aes = TRUE
)

Arguments

mapping

Set of aesthetic mappings created by aes() or aes_(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot().

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify() for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame, and will be used as the layer data. A function can be created from a formula (e.g. ~ head(.x, 10)).

position

Position adjustment, either as a string, or the result of a call to a position adjustment function.

...

Other arguments passed on to layer(). These are often aesthetics, used to set an aesthetic to a fixed value, like colour = "red" or size = 3. They may also be parameters to the paired geom/stat.

side

The side on which to draw the half violin plot. "l" for left, "r" for right, defaults to "l".

nudge

Add space between the violinplot and the middle of the space allotted to a given factor on the x-axis.

draw_quantiles

If not(NULL) (default), draw horizontal lines at the given quantiles of the density estimate.

trim

If TRUE (default), trim the tails of the violins to the range of the data. If FALSE, don't trim the tails.

scale

if "area" (default), all violins have the same area (before trimming the tails). If "count", areas are scaled proportionally to the number of observations. If "width", all violins have the same maximum width.

na.rm

If FALSE, the default, missing values are removed with a warning. If TRUE, missing values are silently removed.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. It can also be a named logical vector to finely select the aesthetics to display.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders().

geom, stat

Use to override the default connection between geom_violin() and stat_ydensity().

bw

The smoothing bandwidth to be used. If numeric, the standard deviation of the smoothing kernel. If character, a rule to choose the bandwidth, as listed in stats::bw.nrd().

adjust

A multiplicate bandwidth adjustment. This makes it possible to adjust the bandwidth while still using the a bandwidth estimator. For example, adjust = 1/2 means use half of the default bandwidth.

kernel

Kernel. See list of available kernels in density().

Details

The half-violin plot accepts an optional `split` aesthethic to compare data separated by a binary variable side-by-side.

References

Hintze, J. L., Nelson, R. D. (1998) Violin Plots: A Box Plot-Density Trace Synergism. The American Statistician 52, 181-184.

See also

[geom_half_violin()] for examples.

Examples

ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) +
  geom_half_violin()


ggplot(iris, aes(x = Species, y = Petal.Width, fill = Species)) +
  geom_half_violin(side = "r")

  
ggplot() +
  geom_half_violin(
    data = ToothGrowth, 
    aes(x = as.factor(dose), y = len, split = supp, fill = supp),
    position = "identity"
  ) + 
  theme_minimal()  

  
ggplot(ToothGrowth, aes(x = supp, y = len, color = supp)) + 
  geom_half_violin(side = c("l", "r"))


ggplot(data = ToothGrowth, aes(x = 1, y = len)) +
  geom_half_point(aes(y = len), side = "l") +
  geom_half_violin(aes(y = len), side = "r") +
  coord_flip()