2D QTL plot
Usage
qtl2dplot(
d,
chrlen = gap::hg19,
snp_name = "SNP",
snp_chr = "Chr",
snp_pos = "bp",
gene_chr = "p.chr",
gene_start = "p.start",
gene_end = "p.end",
trait = "p.target.short",
gene = "p.gene",
TSS = FALSE,
cis = "cis",
value = "log10p",
plot = TRUE,
cex.labels = 0.6,
cex.points = 0.6,
xlab = "QTL position",
ylab = "Gene position"
)Arguments
- d
Data to be used.
- chrlen
lengths of chromosomes for specific build: hg18, hg19, hg38.
- snp_name
variant name.
- snp_chr
variant chromosome.
- snp_pos
variant position.
- gene_chr
gene chromosome.
- gene_start
gene start position.
- gene_end
gene end position.
- trait
trait name.
- gene
gene name.
- TSS
to use TSS when TRUE.
- cis
cis variant when TRUE.
- value
A specific value to show.
- plot
to plot when TRUE.
- cex.labels
Axis label extension factor.
- cex.points
Data point extension factor.
- xlab
X-axis title.
- ylab
Y-axis title.