Reading and writing ff vectors using ff subscripts

Function ffindexget allows to extract elements from an ff vector according to positive integer suscripts stored in an ff vector.
Function ffindexset allows the inverse operation: assigning to elements of an ff vector according to positive integer suscripts stored in an ff vector. These functions allow more control than the method dispatch of [ and [<- if an ff integer subscript is used.

Usage

ffindexget(x, index, indexorder = NULL, FF_RETURN = NULL
, BATCHSIZE = NULL, BATCHBYTES = getOption("ffmaxbytes"), VERBOSE = FALSE)
ffindexset(x, index, value, indexorder = NULL
, BATCHSIZE = NULL, BATCHBYTES = getOption("ffmaxbytes"), VERBOSE = FALSE)

Arguments

x: A ff vector containing the elements
index: A ff integer vector with integer subscripts in the range from 1 to length(x).
value: An ff vector of the same vmode as x containing the values to be assigned
indexorder: Optionally the return value of ffindexorder, see details
FF_RETURN: Optionally an ff vector of the same vmode as x in which the returned values shall be stored, see details.
BATCHSIZE: Optinal limit for the batchsize (see details)
BATCHBYTES: Limit for the number of bytes per batch
VERBOSE: Logical scalar for verbosing

Details

Accessing integer positions in an ff vector is a non-trivial task, because it could easily lead to random-access to a disk file. We avoid random access by loading batches of the subscript values into RAM, order them ascending, and only then access the ff values on disk. Since ordering is expensive, it may pay to do the batched ordering once upfront and then re-use it with ffindexorder, similar to storing and using hybrid index information with as.hi.

Value

Function ffindexget returns an ff vector with the extracted elements.
Function ffindexset returns the ff vector in which we have updated values.

Author

Jens Oehlschlägel

Examples

message("ff integer subscripts with ff return/assign values")
#> ff integer subscripts with ff return/assign values
x <- ff(factor(letters))
i <- ff(2:9)
xi <- x[i]
xi
#> ff (open) integer length=8 (8) levels: a b c d e f g h i j k l m n o p q r s t u v w x y z
#> [1] [2] [3] [4]     [5] [6] [7] [8] 
#>   b   c   d   e   :   f   g   h   i 
xi[] <- NA
xi
#> ff (open) integer length=8 (8) levels: a b c d e f g h i j k l m n o p q r s t u v w x y z
#> [1] [2] [3] [4]     [5] [6] [7] [8] 
#>  NA  NA  NA  NA   :  NA  NA  NA  NA 
x[i] <- xi
x
#> ff (open) integer length=26 (26) levels: a b c d e f g h i j k l m n o p q r s t u v w x y z
#>  [1]  [2]  [3]  [4]  [5]  [6]  [7]  [8]      [19] [20] [21] [22] [23] [24] [25] 
#>   a    NA   NA   NA   NA   NA   NA   NA    :   s    t    u    v    w    x    y  
#> [26] 
#>   z  
message("ff integer subscripts: more control with ffindexget/ffindexset")
#> ff integer subscripts: more control with ffindexget/ffindexset
xi <- ffindexget(x, i, FF_RETURN=xi)
x <- ffindexset(x, i, xi)
rm(x, i, xi)
gc()
#>           used (Mb) gc trigger  (Mb) max used  (Mb)
#> Ncells 1246226 66.6    2239654 119.7  2239654 119.7
#> Vcells 2291897 17.5    8388608  64.0  8050561  61.5