Package index • TMB

All functions

FreeADFun(): Free memory allocated on the C++ side by MakeADFun.
GK(): Gauss Kronrod configuration
MakeADFun(): Construct objective functions with derivatives based on a compiled C++ template.
Rinterface(): Create minimal R-code corresponding to a cpp template.
SR(): Sequential reduction configuration
TMB.Version(): Version information on API and ABI.
as.list(<sdreport>): Convert estimates to original list format.
benchmark() plot(<parallelBenchmark>): Benchmark parallel templates
checkConsistency(): Check consistency and Laplace accuracy
compile(): Compile a C++ template to DLL suitable for MakeADFun.
config(): Get or set internal configuration variables
confint(<tmbprofile>): Profile based confidence intervals.
dynlib(): Add dynlib extension
gdbsource() print(<backtrace>): Source R-script through gdb to get backtrace.
newton(): Generalized newton optimizer.
newtonOption(): Set newton options for a model object.
normalize(): Normalize process likelihood using the Laplace approximation.
oneStepPredict(): Calculate one-step-ahead (OSA) residuals for a latent variable model.
openmp(): Control number of OpenMP threads used by a TMB model.
plot(<tmbprofile>): Plot likelihood profile.
precompile(): Precompile the TMB library in order to speed up compilation of templates.
print(<checkConsistency>): Print output from checkConsistency
print(<sdreport>): Print brief model summary
runExample(): Run one of the test examples.
runSymbolicAnalysis(): Run symbolic analysis on sparse Hessian
sdreport(): General sdreport function.
summary(<checkConsistency>): Summarize output from checkConsistency
summary(<sdreport>): summary tables of model parameters
template(): Create cpp template to get started.
tmbprofile(): Adaptive likelihood profiling.
tmbroot(): Compute likelihood profile confidence intervals of a TMB object by root-finding